PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049021001
Common NameGSBRNA2T00049021001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 366aa    MW: 40482.6 Da    PI: 5.7402
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049021001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.23.7e-31143243198
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdq 86 
                          k+fqrl+se+Dei++LqG++df++++g +ps+++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ +k+ +q
  GSBRNA2T00049021001 143 KMFQRLFSETDEIAMLQGFLDFTSTKG-DPSENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNslkrGKTEDQITYAKDLEQ 231
                          58*************************.9*************************************9999887778999*********** PP

               DUF573  87 kifelskkiWgs 98 
                           +fels+kiWgs
  GSBRNA2T00049021001 232 RTFELSRKIWGS 243
                          **********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-25145242IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAPKDKIANP PVASSSEEEE EEEESGSSVE ESNSSDDEAG DVQSKLTQKP VAPPPPAKKP  60
ESDSEEESES DSDSEPATKT KPLNAVVTKP IPPESSTAKR SLKQADNEPK KKAKTSTTTE  120
QAKKKPSGAD EEVKKISGEE AKKMFQRLFS ETDEIAMLQG FLDFTSTKGD PSENMDAFCD  180
YVKTLIDFNA SKAQIVTKLQ RCKKKFVNIV KNSLKRGKTE DQITYAKDLE QRTFELSRKI  240
WGSDGVLPAK PRKKSKEVEL VSTPKKKTEV ETQKKVSVVE NHHLSESREM ALFFKAENGS  300
VLGLDESTVS GVWDMVEDGP KKREMEEKLK KLKAKQMELC LQRTALVDYT AKMIFKNNAS  360
SSSSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114PKKKAKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.136590.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049021001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410360.0AC241036.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137503.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ9SB421e-106MDA1_ARATH; Mediator-associated protein 1
TrEMBLA0A078FCM10.0A0A078FCM1_BRANA; BnaA03g47200D protein
STRINGBra019183.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.17e-90DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]